Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs34571151 chr11:123527616 C/T 1.74E-5 498 31.78 28.85 30.42 KM Plot
THCA rs34593101 chr1:152881350 C/T 9.4E-5 501 31.47 31.83 58.43 KM Plot
THCA rs34613828 chr2:87022759 A/T 5.89E-8 503 32.77 28.23 32.1 KM Plot
THCA rs34614731 chr6:130360617 T/C 2.35E-7 494 31.27 33.27 32.5 KM Plot
THCA rs34626245 chr19:33372814 G/A 2.3E-5 503 31.42 34.82 32.93 KM Plot
THCA rs34682685 chr16:72096227 G/A 3.6E-6 496 31.8 25.32 27.97 KM Plot
THCA rs34688576 chr6:133118214 C/T 0 500 31.43 35.2 29.05 KM Plot
THCA rs34711162 chr2:87039343 AT/A 3.25E-8 486 32.82 28.12 29.9 KM Plot
THCA rs34720106 chr7:64291745 G/A 0.000144 502 31.47 32.5 31.27 KM Plot
THCA rs34761198 chr12:132300606 CATT/C 0.000152 489 31.88 25.1 47.98 KM Plot
THCA rs34813683 chr2:87039238 C/A 7.86E-8 496 32.6 28.63 32.1 KM Plot
THCA rs34840005 chr6:133090649 G/GA 1.26E-6 497 31.47 33.7 30.78 KM Plot
THCA rs34855635 chr2:87025936 T/C 5.89E-8 503 32.77 28.23 32.1 KM Plot
THCA rs34889136 chr1:152923124 A/G 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs34898110 chr7:32802719 G/A 0.000102 500 31.45 31.47 32.1 KM Plot